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Once running, BEAUti will look similar irrespective of which computer system it is running on.

GAP=- DATATYPE=DNA; MATRIX human AGAAATATGTCTGATAAAAGAGTTACTTTGATAGAGTAAATAATAGGAGC... chimp AGAAATATGTCTGATAAAAGAATTACTTTGATAGAGTAAATAATAGGAGT... bonobo AGAAATATGTCTGATAAAAGAATTACTTTGATAGAGTAAATAATAGGAGT... gorilla AGAAATATGTCTGATAAAAGAGTTACTTTGATAGAGTAAATAATAGAGGT... orangutan AGAAATATGTCTGACAAAAGAGTTACTTTGATAGAGTAAAAAATAGAGGT... siamang AGAAATACGTCTGACGAAAGAGTTACTTTGATAGAGTAAATAACAGGGGT... ; END; BEAST can also import FASTA files (as long as the sequences have been aligned) or BEAST XML files (in which case the data will imported but the models and settings will not).

This tutorial was written by Tracy Heath for workshops on applied phylogenetics and molecular evolution and is licensed under a Creative Commons Attribution 4.0 International License.

An introductory tutorial to getting started with BEAST.

The bottom half of this panel allows you to choose how BEAST selects a starting tree.

In most situations it is better to leave this as Selecting priors is one of the most challenging aspects of Bayesian analysis.

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The operators specify how the parameter changes as the MCMC runs.

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